How long does an HMRC enquiry into an R&D claim take?

As long as the disagreement lasts. The legislation fixes a deadline for opening an enquiry and sets none for closing one, so the length turns on what HMRC is questioning and how quickly the answer can be evidenced. The stages are fixed. The intervals between them are not.

How it opens

With a letter, and only with a letter. Paragraph 24 of Schedule 18 to the Finance Act 1998 lets an officer enquire into a company tax return “if he gives notice to the company of his intention to do so”. Where HMRC withholds payment because it thinks a claim may be incorrect, its published aim is to open an enquiry within 60 days of receiving the claim — the one stage with a target attached.

The middle, where the months go

Rounds. HMRC writes, you answer, documents follow, HMRC writes again. Each round carries two waiting periods, theirs and yours, and the number of rounds, not the size of the claim, fills the calendar. The material itself is on our page on what HMRC asks for.

Where a request goes unanswered, HMRC can formalise it. Schedule 36 to the Finance Act 2008 lets an officer require information or documents by written notice, where reasonably required to check the taxpayer’s tax position. There is a right of appeal against such a notice, though not for statutory records or where the tribunal approved it. Meetings work differently: getting a working engineer and an HMRC officer into the same hour is often the slowest booking in the file.

The routes out

Agreement, then closure. Completion is a notice too: paragraph 32 gives a partial closure notice where one matter is finished, a final closure notice where the enquiry as a whole is. Partial closure matters here — one contested project need not hold the rest of the claim hostage. Paragraph 34 carries the amendments giving effect to HMRC’s conclusions, and an appeal against one runs 30 days from notification.

Where an enquiry has stopped moving, paragraph 33 lets the company ask the tribunal to direct HMRC to close it within a specified period. The tribunal must give that direction unless satisfied the officer has reasonable grounds for not closing.

Alternative Dispute Resolution runs alongside all of it. Anyone can apply — individuals, organisations, agents — at any stage of an enquiry and of tribunal proceedings, and it leaves your appeal and review rights intact. An HMRC officer trained in mediation acts as a neutral and impartial mediator who “will not suggest or impose solutions”.

Then the formal track: 30 days from a decision letter to appeal or accept a review; a review officer from another team, uninvolved in the original decision, who upholds, varies or cancels it, usually within 45 days on HMRC’s own account; then 30 days from the review letter to appeal to the First-tier Tribunal, which is independent of HMRC.

What that means in months

From practice rather than published data: a check where the records exist and answer the questions asked can close in weeks. Where HMRC contests whether the work met the definition of R&D, or whether a cost head qualifies, expect months. A case that runs through statutory review to the tribunal is measured in years. No one can hand you a date — not us, and not the officer holding the file.

None of this is unusual now. HMRC checked around one in six claims in 2023-24, its latest published figure.

What shortens an enquiry in practice

Records made while the work was happening, rather than assembled afterwards. First responses that answer the whole question instead of inviting the follow-up. The competent professional taking the technical points directly, because an adviser paraphrasing an engineer produces the answer that needs another letter. Every partial answer buys another round, and rounds are what the calendar is made of. What has to be repaid at the end, if anything, is a separate question.

Where to go next

Our HMRC enquiries guide walks the process stage by stage, and enquiry support is included as standard for claims we prepare. If an enquiry into a claim someone else filed has landed on your desk, talk to us — we will give you an honest read on where it stands.

Sources

  • FA 1998 Sch 18 para 24 — an enquiry begins with notice of enquiry given to the company.
  • FA 1998 Sch 18 para 32, para 33 and para 34 — completion by partial or final closure notice; the company’s right to apply to the tribunal for a direction to close, which the tribunal must give unless the officer has reasonable grounds not to; amendment of the return to give effect to the conclusions, and the 30-day appeal window against that amendment.
  • FA 2008 Sch 36 para 1 and para 29 — the power to require information or documents reasonably required for checking a taxpayer’s tax position, and the right of appeal against a taxpayer notice, excluding statutory records and tribunal-approved notices.
  • CIRD80525: practice note for ISBC and WMBC — the aim to open an enquiry within 60 days of receiving the claim where HMRC decides not to pay.
  • Use alternative dispute resolution to settle a tax dispute and CC/FS21 — that anyone can apply, including individuals, organisations and agents, at any stage of an enquiry and of tribunal proceedings; the mediator as a neutral and impartial HMRC officer who will not suggest or impose solutions; and that ADR does not affect the right to appeal or to ask for a review.
  • Disagree with a tax decision: appeal against an HMRC decision and get a review — the 30 days to appeal or accept a review, the review officer from a different team, reviews usually taking 45 days, and 30 days from the review result letter to appeal to the tribunal. Tax tribunal — the tribunal’s independence of government and HMRC.
  • HMRC’s approach to R&D tax reliefs 2023 to 2024 — 9,700 compliance checks against 61,000 claims received, 17% coverage.

This page describes the rules as they stood at the review date above, as general information rather than advice on your circumstances. For how that distinction works, see our terms; for an answer on your own facts, talk to us.